Ok I figure I am going to have to start again with this. I have another problem though. I want to move some of the joints since they are not exactly where they should be. Is there anyway I can do this without deleting all my ik handles and my constraints. I have a load of models needing to be rigged and had hoped I would be able to use this rig for all of them by simply adjusting the placement of a few joints and then skinning my models to it and painting the weights. I know I could just delete all the ik from the skeleton and then set up each one but I have 13 to do and had hoped I could use the rig I had created with all the Ik and constraints on all of them.

Any advice is much appreciated.