well heres my two sense.
If you followed the movie's you probly would of seen a pattern. The pattern is mentioned in the matrix reloaded special features. The movies are somed up like life. Theres Birth<the first movie the birth of neo, theres Life<The matrix reloaded and death the matrix revolutions. I dont think the movie coulda ended any other way. I thought the ending sceen was the best piece of movie fotage ever. JUst the fact that you could see the rain drops. Now im sure your probly saying oh i coulda done it with cg work. To bad its all real. As for the flying through the air. The walcosky brothers are huge anime fans hince the creation of the animatrix they wanted more of a anime feel to the ending something that hasnt been done befour in feature film....thus leading to the fighting in the air. As for the philosophy behind the movie. Shire geneis. Id like to see you think of something that good. Sure it makes the audience look twice but honestly its better then some shity ass story line...they could of made it neo good agent smith bad....neo chases agent smith and kills him....no matrix...no col. sanders "the architech" .Like any other movie. I congraduate the W. brothers and honor them for there supereb thinking and directing skills and cant wait till see there next project.
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PEace